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Weekly Report -- 28/04/2017




Another disrupted week, this time due to being ill. Spent most of my available time looking over the output of my new multi-process state machine generation algorithm. The extra sequence fragments that become apparent when considering multiple processes managed to reveal a few new situations where my code wasn't quite doing the right thing. I've fixed those and am reasonably happy again with the machines produced for my test dataset.

Moved on to some code re-factoring, as the existing code-base had become a bit of a mess from hacking in fixes to all of the edge cases I had been dealing with. In particular, I'm aiming to separate code that deals with the machine itself, i.e. the states and their transitions, from the code that compares sequences and determines what needs to be added to (or removed from) the machine to accommodate the variation.